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With AI Tools, Scientists Can Crack the Code of Life

With AI Tools, Scientists Can Crack the Code of Life

Released Thursday, 27th June 2024
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With AI Tools, Scientists Can Crack the Code of Life

With AI Tools, Scientists Can Crack the Code of Life

With AI Tools, Scientists Can Crack the Code of Life

With AI Tools, Scientists Can Crack the Code of Life

Thursday, 27th June 2024
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Today in Science from Wired This

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cyber threats in their tracks. With

1:17

AI tools, scientists can crack the code of

1:19

life. Google's AI research lab,

1:21

DeepMind, is steadily building knowledge of how

1:23

genes and their products work inside the

1:25

body. And how and why they

1:27

sometimes go wrong. Bayjuo

1:30

Muderos. In

1:33

2021, AI research lab DeepMind

1:35

announced the development of its

1:37

first digital biology neural network,

1:40

AlphaFold. The model

1:42

was capable of accurately predicting the

1:44

3D structure of proteins, which determines

1:46

the functions that these molecules play.

1:49

We're just floating bags of water moving

1:52

around, says Pushmeat Coley, VP

1:54

of research at DeepMind. What

1:56

makes us special are proteins, the building blocks

1:58

of life, how they interact with the world. with

2:00

each other is what makes the magic of life

2:02

happen. AlphaFold was considered by

2:04

the journal Science as the breakthrough of the year in

2:06

2021. In 2022, it was the most cited research paper

2:12

in AI. People have been

2:14

on protein structures for many decades and were

2:16

not able to make that much progress, Coley

2:18

says. Then came AI. DeepMind

2:21

also released the AlphaFold protein structure

2:23

database, which contained the protein structures

2:26

of almost every organism whose genome

2:28

has been sequenced, making it freely

2:30

available to scientists worldwide. More

2:33

than 1.7 million researchers in 190

2:36

countries have used it for research ranging

2:39

from the design of plastic-eating enzymes to

2:42

the development of more effective

2:44

malaria vaccines. A

2:46

quarter of the research involving

2:48

AlphaFold was dedicated to the

2:50

understanding of cancer, COVID-19, and

2:53

neurodegenerative diseases like Parkinson's and

2:55

Alzheimer's. Last year,

2:57

DeepMind released its next generation of

2:59

AlphaFold, which extended its structure prediction

3:02

algorithm to biomolecules like nucleic acids

3:04

and ligands. It

3:06

has democratized science research, Coley

3:09

says. Scientists working in a

3:11

developing country on a neglected tropical disease did

3:13

not have access to the funds to get

3:16

the structure of a protein computed. Now,

3:18

at the click of a button, they can

3:20

go to the AlphaFold database and get these

3:22

predictions for free. For

3:24

instance, one of DeepMind's early

3:26

partners, the Drugs for Neglected

3:28

Diseases Initiative, used AlphaFold to

3:30

develop medicine for diseases that

3:32

affect millions, such as sleeping

3:34

sickness, chagas disease, and leishmaniasis,

3:37

yet received comparatively little research.

3:40

DeepMind's latest breakthrough is called

3:42

AlphaMiscense. The model categorizes the

3:44

so-called Miscense mutations, genetic alterations

3:46

that can result in different

3:48

amino acids being produced at

3:50

particular positions in proteins. Such

3:53

mutations can alter the function of the

3:55

protein itself, and AlphaMiscense attributes

3:57

a likelihood score for that mutation.

4:00

being either pathogenic or benign. Understanding

4:03

and predicting those effects is crucial

4:05

for the discovery of rare genetic

4:07

diseases, Coley says. The

4:10

algorithm, which was released last year, has classified

4:12

around 89% of all possible human missense. Before,

4:16

only 0.1% of all possible

4:19

variants had been clinically classified

4:21

by researchers. This

4:23

is just the beginning, Coley says. Ultimately,

4:26

he believes AI could eventually lead

4:28

to the creation of a virtual

4:30

cell that could radically accelerate biomedical

4:33

research, enabling biology to be explored

4:35

in silico rather than in real-world

4:37

laboratories. With AI and

4:39

machine learning, we finally have the tools

4:41

to comprehend this very sophisticated system that

4:43

we call life. Thanks

4:46

for listening to WIRED. My name is

4:48

Zeke Robison, and for more stories like this one,

4:50

visit us at wired.com. Like

4:53

what you learned? Subscribe everywhere

4:55

you listen to podcasts. And

4:58

get more science news at

5:00

wired.com/science.

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